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4AJA

3D structure of E. coli Isocitrate Dehydrogenase in complex with Isocitrate, calcium(II) and thioNADP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]100
Detector technologyCCD
DetectorMARMOSAIC 225 mm CCD
Spacegroup nameP 43 21 2
Unit cell lengths104.010, 104.010, 149.563
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.515 - 1.799
R-factor0.1843
Rwork0.183
R-free0.20400
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1ai2
RMSD bond length0.007
RMSD bond angle1.086
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.910
High resolution limit [Å]1.8001.800
Rmerge0.0700.630
Number of reflections76263
<I/σ(I)>17.72.7
Completeness [%]99.496.7
Redundancy7.27.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
11.85 M NH4SO4, 50 MM CITRIC ACID/NA2HPO4 BUFFER PH 5.8, 0.1 M NACL AND 0.2 M DTT

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PDB entries from 2024-07-17

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