4ZYN

Crystal Structure of Parkin E3 ubiquitin ligase (linker deletion; delta 86-130)

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	ROTATING ANODE
Source details	RIGAKU MICROMAX-007 HF
Temperature [K]	100
Detector technology	CCD
Collection date	2012-11-28
Detector	RIGAKU SATURN 944+
Wavelength(s)	1.5418
Spacegroup name	H 3
Unit cell lengths	114.105, 114.105, 186.399
Unit cell angles	90.00, 90.00, 120.00

Refinement procedure

Resolution	36.620 - 2.540
R-factor	0.1947
Rwork	0.193
R-free	0.23530
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	4k7d
RMSD bond length	0.009
RMSD bond angle	1.332
Data reduction software	XDS
Data scaling software	XDS
Phasing software	MOLREP
Refinement software	REFMAC (5.8.0107)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	50.000	50.000	2.580
High resolution limit [Å]	2.540	6.890	2.540
Rmerge	0.128	0.046
Rmeas	0.131	0.048
Rpim	0.047	0.015
Total number of observations	230168
Number of reflections	28338
<I/σ(I)>	6.2
Completeness [%]	95.0	99.7	69
Redundancy	8.1	10.3	2.7
CC(1/2)		0.999	0.123

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP	7.5	277	0.3M Ammonium Sulfate, 0.1M HEPES pH 7.5, 18% (w/v) PEG 3350