4Y9E
Crystal structure of V30M mutated transthyretin in complex with gamma-mangostin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
Synchrotron site | Photon Factory |
Beamline | AR-NE3A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-11-17 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 1 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 43.415, 85.806, 64.073 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.150 - 1.490 |
R-factor | 0.18584 |
Rwork | 0.184 |
R-free | 0.21888 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4pwe |
RMSD bond length | 0.014 |
RMSD bond angle | 1.829 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.530 |
High resolution limit [Å] | 1.490 | 1.490 |
Rmerge | 0.045 | 0.274 |
Number of reflections | 38590 | |
<I/σ(I)> | 49.6 | 4.3 |
Completeness [%] | 97.7 | 95.6 |
Redundancy | 6 | 3.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 293 | 16% PEG400, 0.1 M NaOAc, 0.2 M CaCl2 |