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4XFM

Crystal structure of a domain of unknown function (DUF1537) from Pectobacterium atrosepticum (ECA3761), Target EFI-511609, with bound D-threonate, domain swapped dimer

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 31-ID
Synchrotron siteAPS
Beamline31-ID
Temperature [K]100
Detector technologyCCD
Collection date2014-07-10
DetectorRAYONIX MX225HE
Wavelength(s)0.9793
Spacegroup nameC 1 2 1
Unit cell lengths153.696, 47.611, 64.142
Unit cell angles90.00, 107.12, 90.00
Refinement procedure
Resolution27.919 - 1.550
R-factor0.1658
Rwork0.165
R-free0.19090
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4xgj
RMSD bond length0.010
RMSD bond angle1.269
Data reduction softwareMOSFLM
Data scaling softwareAimless (0.1.27)
Phasing softwarePHASER
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]61.30061.3001.580
High resolution limit [Å]1.5508.4901.550
Rmerge0.0490.0340.659
Rpim0.0300.0240.398
Total number of observations23445773711664
Number of reflections63987
<I/σ(I)>1429.42.2
Completeness [%]99.060.999.1
Redundancy3.72.83.7
CC(1/2)0.9980.9840.716
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5298Protein (67.0 mg/ml, 10 mM HEPES pH 7.5, 5 mM DTT, 10 mM D-Threonate); Reservoir (MCSG1(F1); 0.1 M Bis-Tris pH 6.5, 20%(w/v) PEG MME 5000); Cryoprotection (80% Reservoir, 20% ethylene glycol)

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PDB entries from 2024-05-15

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