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4XF5

Crystal structure of a TRAP periplasmic solute binding protein from Chromohalobacter salexigens DSM 3043 (Csal_0678), Target EFI-501078, with bound (S)-(+)-2-Amino-1-propanol.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 31-ID
Synchrotron siteAPS
Beamline31-ID
Temperature [K]100
Detector technologyCCD
Collection date2014-11-12
DetectorRAYONIX MX225HE
Wavelength(s)0.9793
Spacegroup nameC 1 2 1
Unit cell lengths122.605, 51.154, 111.943
Unit cell angles90.00, 115.96, 90.00
Refinement procedure
Resolution27.559 - 1.450
R-factor0.1653
Rwork0.164
R-free0.19100
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4uab
RMSD bond length0.010
RMSD bond angle1.257
Data scaling softwareAimless (0.1.27)
Phasing softwarePHENIX
Refinement softwarePHENIX (1.8.1_1168)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]100.650100.6501.470
High resolution limit [Å]1.4507.9401.450
Rmerge0.0500.0240.557
Rpim0.0320.0150.464
Total number of observations29298723085649
Number of reflections99699
<I/σ(I)>1232.11.5
Completeness [%]90.094.753.1
Redundancy2.93.32
CC(1/2)0.9980.9980.641
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5298Protein (60.0 mg/ml, 10 mM HEPES pH 7.5, 5 mM DTT, 10 mM S-Alaninol); Reservoir (MCSG1(C6), 0.2 M Magnesium Chloride, 0.1 M HEPES pH 7.5, 30 %(v/v) PPG P 400); Cryoprotection (Reservoir Solution)

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PDB entries from 2024-05-15

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