Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4X7F

Crystal structure of norovirus GII.10 P domain in complex with Nano-25

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyPIXEL
Collection date2013-09-09
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.984
Spacegroup nameP 21 21 21
Unit cell lengths49.280, 112.980, 142.890
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.587 - 1.700
R-factor0.1612
Rwork0.160
R-free0.18680
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)As search models for molecular replacement PDB code 3ONU was used for GII.10 P domain (molecule 1) and PDB code 3P0G for Nano-25 (molecule 2)
RMSD bond length0.010
RMSD bond angle1.191
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]46.5901.800
High resolution limit [Å]1.7007.6001.700
Rmerge0.0560.0310.355
Rmeas0.0670.0380.487
Total number of observations412753
Number of reflections88133189111178
<I/σ(I)>14.3320.822.58
Completeness [%]99.198.496.8
Redundancy4.73.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5291PEG3350, ammonium dihydrogen phosphate

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon