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4WKP

Crystal structure of Helicobacter pylori 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN) complexed with 2-(2-hydroxyethoxy)ethylthiomethyl-DADMe-Immucillin-A

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X29A
Synchrotron siteNSLS
BeamlineX29A
Temperature [K]100
Detector technologyCCD
Collection date2014-06-20
DetectorADSC QUANTUM 315r
Wavelength(s)1.075
Spacegroup nameP 21 21 21
Unit cell lengths72.706, 74.078, 176.328
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution25.000 - 1.580
R-factor0.1859
Rwork0.184
R-free0.21310
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4ffs
RMSD bond length0.007
RMSD bond angle1.330
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0073)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.610
High resolution limit [Å]1.5804.2901.580
Rmerge0.1070.0440.874
Total number of observations1005870
Number of reflections128267
<I/σ(I)>7.82.27
Completeness [%]98.499.894.3
Redundancy7.87.87.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP295Protein (10 mg/mL); Reservoir (0.2 M sodium fluoride and 2.2 M ammonium sulfate); Cryoprotection (20% (v/v) glycerol)

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