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4UZB

KSHV LANA (ORF73) C-terminal domain mutant bound to LBS1 DNA (R1039Q, R1040Q, K1055E, K1109A, D1110A, A1121E, K1138S, K1140D, K1141D)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, DESY BEAMLINE P11
Synchrotron sitePETRA III, DESY
BeamlineP11
Temperature [K]293
Detector technologyPIXEL
Collection date2013-12-05
DetectorDECTRIS PILATUS 6M
Spacegroup nameI 21 3
Unit cell lengths177.840, 177.840, 177.840
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.530 - 2.865
R-factor0.1234
Rwork0.122
R-free0.15470
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2ypy
RMSD bond length0.008
RMSD bond angle1.059
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHENIX (PHASER-MR)
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.5303.040
High resolution limit [Å]2.8702.870
Rmerge0.0800.860
Number of reflections21605
<I/σ(I)>15.651.99
Completeness [%]99.999.7
Redundancy6.46.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.62970.9 UL OF 1.60 MM LANA(1008-1146) MUTANT, 0.96 MM DSDNA, 10 MM BISTRIS PH 6.5, 0.9 M NACL, AND 5 MM DTT WERE ADDED TO 0.9 UL OF RESERVOIR SOLUTION CONTAINING 50 MM MES PH 6.6, 27% PEG4000, AND 0.3 M AMMONIUM ACETATE IN A HANGING DROP SETUP. CRYSTALS GREW WITHIN FIVE DAYS AT 24 DEGREES CENTIGRADE.

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PDB entries from 2024-05-15

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