4UZB
KSHV LANA (ORF73) C-terminal domain mutant bound to LBS1 DNA (R1039Q, R1040Q, K1055E, K1109A, D1110A, A1121E, K1138S, K1140D, K1141D)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, DESY BEAMLINE P11 |
Synchrotron site | PETRA III, DESY |
Beamline | P11 |
Temperature [K] | 293 |
Detector technology | PIXEL |
Collection date | 2013-12-05 |
Detector | DECTRIS PILATUS 6M |
Spacegroup name | I 21 3 |
Unit cell lengths | 177.840, 177.840, 177.840 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.530 - 2.865 |
R-factor | 0.1234 |
Rwork | 0.122 |
R-free | 0.15470 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ypy |
RMSD bond length | 0.008 |
RMSD bond angle | 1.059 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX (PHASER-MR) |
Refinement software | PHENIX ((PHENIX.REFINE)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.530 | 3.040 |
High resolution limit [Å] | 2.870 | 2.870 |
Rmerge | 0.080 | 0.860 |
Number of reflections | 21605 | |
<I/σ(I)> | 15.65 | 1.99 |
Completeness [%] | 99.9 | 99.7 |
Redundancy | 6.4 | 6.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.6 | 297 | 0.9 UL OF 1.60 MM LANA(1008-1146) MUTANT, 0.96 MM DSDNA, 10 MM BISTRIS PH 6.5, 0.9 M NACL, AND 5 MM DTT WERE ADDED TO 0.9 UL OF RESERVOIR SOLUTION CONTAINING 50 MM MES PH 6.6, 27% PEG4000, AND 0.3 M AMMONIUM ACETATE IN A HANGING DROP SETUP. CRYSTALS GREW WITHIN FIVE DAYS AT 24 DEGREES CENTIGRADE. |