Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4P5D

CRYSTAL STRUCTURE OF RAT DNPH1 (RCL) WITH 6-NAPHTHYL-PURINE-RIBOSIDE-MONOPHOSPHATE

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID29
Synchrotron siteESRF
BeamlineID29
Temperature [K]100
Detector technologyPIXEL
Collection date2011-03-09
DetectorPSI PILATUS 6M
Wavelength(s)0.97930
Spacegroup nameP 61 2 2
Unit cell lengths178.200, 178.200, 56.922
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution38.165 - 2.110
R-factor0.1757
Rwork0.175
R-free0.19780
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4fyi
RMSD bond length0.009
RMSD bond angle1.430
Data reduction softwareMOSFLM
Data scaling softwareSCALA (3.3.15)
Phasing softwareMOLREP (10.2.31)
Refinement softwarePHENIX ((phenix.refine: 1.8.4_1496))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]38.5902.220
High resolution limit [Å]2.1092.110
Rmerge0.0660.540
Number of reflections31129
<I/σ(I)>15.93.9
Completeness [%]99.4
Redundancy6.56.9
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP82911.3 M LITHIUM SULFATE, 1% PEG2K, 20 MM MAGNESIUM SULFATE, 100 MM TRIS, PH 8.0

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon