4O2Z
Crystal Structure of MPK3 from Leishmania donovani, LdBPK_100540 in the presence of NVP-BBT594
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-12-12 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | .97918 |
Spacegroup name | I 41 2 2 |
Unit cell lengths | 87.141, 87.141, 295.100 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.870 - 2.710 |
R-factor | 0.2416 |
Rwork | 0.240 |
R-free | 0.26640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | ffas03 all atom model of 3gcp |
RMSD bond length | 0.008 |
RMSD bond angle | 0.880 |
Data scaling software | Aimless (0.2.14) |
Phasing software | PHASER (2.5.5) |
Refinement software | BUSTER-TNT |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.180 | 49.180 | 2.840 |
High resolution limit [Å] | 2.710 | 8.980 | 2.710 |
Rmerge | 0.062 | 0.015 | 0.015 |
Total number of observations | 3970 | 20845 | |
Number of reflections | 16037 | ||
<I/σ(I)> | 24.4 | 72.9 | 1.5 |
Completeness [%] | 99.8 | 97.3 | 99.1 |
Redundancy | 10.2 | 7.9 | 10.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 293 | 0.1 M Citrate, 0.5 M Ammonium Sulfate, 1.0 M Lithium Sulfate, 1 mM NVP-BBT594, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K |