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4NGF

Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 17-mer siRNA having 5'-p and UU-3' ends (3.1 Angstrom resolution)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X29A
Synchrotron siteNSLS
BeamlineX29A
Temperature [K]100
Detector technologyCCD
Collection date2011-03-15
DetectorADSC QUANTUM 315
Wavelength(s)1.07500
Spacegroup nameC 2 2 21
Unit cell lengths99.245, 104.191, 368.640
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.478 - 3.101
R-factor0.2255
Rwork0.223
R-free0.27030
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4ngd
RMSD bond length0.006
RMSD bond angle1.165
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwarePHENIX (1.8.2_1309)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0003.210
High resolution limit [Å]3.1006.6703.100
Rmerge0.1200.0560.650
Number of reflections32098
<I/σ(I)>7.4
Completeness [%]91.699.787.8
Redundancy13.113.513.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.52930.08 M HEPES sodium, pH 7.5, 8% 2-propanol, 16% PEG4000, VAPOR DIFFUSION, HANGING DROP, temperature 293K

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PDB entries from 2024-05-15

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