Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4J07

Crystal structure of a PROBABLE RIBOFLAVIN SYNTHASE, BETA CHAIN RIBH (6,7-dimethyl-8-ribityllumazine synthase, DMRL synthase, Lumazine synthase) from Mycobacterium leprae

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E+ SUPERBRIGHT
Temperature [K]100
Detector technologyCCD
Collection date2011-01-09
DetectorRIGAKU SATURN 944+
Wavelength(s)1.5418
Spacegroup nameP 65 2 2
Unit cell lengths109.950, 109.950, 288.330
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution45.250 - 1.950
R-factor0.2101
Rwork0.208
R-free0.24610
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1w19
RMSD bond length0.013
RMSD bond angle1.521
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER (2.5.2)
Refinement softwareREFMAC
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.000
High resolution limit [Å]1.9508.7201.950
Rmerge0.1210.0730.523
Number of reflections759919535036
<I/σ(I)>19.0531.444.16
Completeness [%]99.696.896.4
Redundancy17.98.15
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5290MD Morpheus screen C12: 12.5% PEG 1000, 12.5% PEG 3350, 12.5% MPD, 30mM sodium-nitrate, 30mM di-sodium hydrogen phosphate, 30mM ammonium sulfate, 100mM Bicine/Trizma base pH 8.5; MyleA.00730.a.A1.PS00659 at 20mg/ml; direct cryo, VAPOR DIFFUSION, SITTING DROP, temperature 290K

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon