4J07
Crystal structure of a PROBABLE RIBOFLAVIN SYNTHASE, BETA CHAIN RIBH (6,7-dimethyl-8-ribityllumazine synthase, DMRL synthase, Lumazine synthase) from Mycobacterium leprae
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
A | 0005829 | cellular_component | cytosol |
A | 0009231 | biological_process | riboflavin biosynthetic process |
A | 0009349 | cellular_component | riboflavin synthase complex |
A | 0016740 | molecular_function | transferase activity |
B | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
B | 0005829 | cellular_component | cytosol |
B | 0009231 | biological_process | riboflavin biosynthetic process |
B | 0009349 | cellular_component | riboflavin synthase complex |
B | 0016740 | molecular_function | transferase activity |
C | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
C | 0005829 | cellular_component | cytosol |
C | 0009231 | biological_process | riboflavin biosynthetic process |
C | 0009349 | cellular_component | riboflavin synthase complex |
C | 0016740 | molecular_function | transferase activity |
D | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
D | 0005829 | cellular_component | cytosol |
D | 0009231 | biological_process | riboflavin biosynthetic process |
D | 0009349 | cellular_component | riboflavin synthase complex |
D | 0016740 | molecular_function | transferase activity |
E | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
E | 0005829 | cellular_component | cytosol |
E | 0009231 | biological_process | riboflavin biosynthetic process |
E | 0009349 | cellular_component | riboflavin synthase complex |
E | 0016740 | molecular_function | transferase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NA A 201 |
Chain | Residue |
A | ALA70 |
A | HIS73 |
A | THR110 |
A | HOH327 |
A | HOH363 |
A | HOH375 |
site_id | AC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 A 202 |
Chain | Residue |
A | HOH309 |
A | HOH340 |
B | ARG128 |
D | LYS123 |
A | GLY85 |
A | ASP86 |
A | THR87 |
site_id | AC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NA B 201 |
Chain | Residue |
B | ALA70 |
B | HIS73 |
B | THR110 |
B | HOH344 |
B | HOH353 |
B | HOH366 |
site_id | AC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 B 202 |
Chain | Residue |
B | ASP86 |
B | THR87 |
B | HOH345 |
C | LYS123 |
E | ARG128 |
E | HOH327 |
site_id | AC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NA C 201 |
Chain | Residue |
C | ALA70 |
C | HIS73 |
C | THR110 |
C | HOH309 |
C | HOH328 |
C | HOH393 |
site_id | AC6 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE SO4 C 202 |
Chain | Residue |
B | LYS123 |
C | GLY85 |
C | ASP86 |
C | THR87 |
C | HOH347 |
C | HOH369 |
D | ARG128 |
D | HOH384 |
site_id | AC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 D 201 |
Chain | Residue |
A | LYS123 |
A | ARG128 |
D | ASP86 |
D | THR87 |
D | HOH357 |
D | HOH370 |
site_id | AC8 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE SO4 D 202 |
Chain | Residue |
A | ASN95 |
A | GLN99 |
B | ASN95 |
C | ASN95 |
C | GLN99 |
D | ASN95 |
D | GLN99 |
E | ASN95 |
E | GLN99 |
site_id | AC9 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NA D 203 |
Chain | Residue |
D | ALA70 |
D | HIS73 |
D | THR110 |
D | HOH326 |
D | HOH329 |
D | HOH334 |
site_id | BC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 E 201 |
Chain | Residue |
C | ARG128 |
E | GLY85 |
E | ASP86 |
E | THR87 |
E | LYS123 |
E | HOH324 |
E | HOH343 |
site_id | BC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NA E 202 |
Chain | Residue |
E | ALA70 |
E | HIS73 |
E | THR110 |
E | HOH316 |
E | HOH328 |
E | HOH369 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 5 |
Details | ACT_SITE: Proton donor => ECO:0000255|HAMAP-Rule:MF_00178 |
Chain | Residue | Details |
A | HIS89 | |
B | HIS89 | |
C | HIS89 | |
D | HIS89 | |
E | HIS89 |
site_id | SWS_FT_FI2 |
Number of Residues | 30 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00178 |
Chain | Residue | Details |
A | ARG128 | |
B | TRP27 | |
B | ALA59 | |
B | VAL81 | |
B | ASP86 | |
B | ASN114 | |
B | ARG128 | |
C | TRP27 | |
C | ALA59 | |
C | VAL81 | |
C | ASP86 | |
C | ASN114 | |
C | ARG128 | |
D | TRP27 | |
D | ALA59 | |
D | VAL81 | |
D | ASP86 | |
D | ASN114 | |
D | ARG128 | |
E | TRP27 | |
E | ALA59 | |
E | VAL81 | |
E | ASP86 | |
E | ASN114 | |
E | ARG128 | |
A | TRP27 | |
A | ALA59 | |
A | VAL81 | |
A | ASP86 | |
A | ASN114 |