4IG9
Structure of NAD-dependent protein deacetylase sirtuin-1 (open state, 2.64 A)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2012-04-04 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 1.26760 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 115.781, 115.781, 350.511 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.941 - 2.640 |
R-factor | 0.2283 |
Rwork | 0.227 |
R-free | 0.26280 |
Structure solution method | SAD |
RMSD bond length | 0.002 |
RMSD bond angle | 0.630 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | SHARP |
Refinement software | PHENIX (1.8.2_1309) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 20.000 | 2.740 |
High resolution limit [Å] | 2.640 | 5.670 | 2.640 |
Rmerge | 0.088 | 0.048 | 0.943 |
Number of reflections | 68583 | ||
<I/σ(I)> | 9.2 | ||
Completeness [%] | 97.1 | 98.3 | 92.8 |
Redundancy | 7.9 | 7.9 | 7.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.4 | 294 | 20 mM TRIS-HCl, 10 % PEG 20,000, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 294K |