4IF6
Structure of NAD-dependent protein deacetylase sirtuin-1 (closed state, 2.25 A)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2012-12-06 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 1.0332 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 92.662, 92.662, 97.700 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.652 - 2.250 |
R-factor | 0.1587 |
Rwork | 0.156 |
R-free | 0.18720 |
Structure solution method | SAD |
RMSD bond length | 0.004 |
RMSD bond angle | 0.815 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | SHARP |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 20.000 | 2.330 |
High resolution limit [Å] | 2.250 | 4.830 | 2.250 |
Rmerge | 0.114 | 0.113 | 0.326 |
Number of reflections | 23090 | ||
<I/σ(I)> | 11 | ||
Completeness [%] | 98.7 | 99.2 | 92.7 |
Redundancy | 9.8 | 9.4 | 9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.4 | 294 | 100 mM Tris-HCl, 10 % (w/v) PEG 20,000, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 294K |