4HCO
Human Plk1-PBD in complex with Thymoquinone at the phophopeptide binding site
Replaces: 4H70Replaces: 3MQ8Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2009-05-29 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 33.260, 102.150, 67.740 |
Unit cell angles | 90.00, 93.96, 90.00 |
Refinement procedure
Resolution | 51.070 - 2.750 |
R-factor | 0.20956 |
Rwork | 0.206 |
R-free | 0.28020 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1umw |
RMSD bond length | 0.008 |
RMSD bond angle | 1.126 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | REFMAC (5.5.0110) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 51.070 | 2.900 |
High resolution limit [Å] | 2.750 | 2.750 |
Rmerge | 0.154 | 0.387 |
Number of reflections | 11125 | |
<I/σ(I)> | 5.3 | 2.8 |
Completeness [%] | 94.6 | 91.5 |
Redundancy | 2.4 | 2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 291 | 1.4M Sodium Potassium Tartrate, 50mM MES pH 6.5, 100mM Hepes pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K |