4DUM
Co-crystal structure of eIF4E with inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 90 |
Detector technology | IMAGE PLATE |
Collection date | 2007-05-01 |
Detector | RIGAKU RAXIS HTC |
Wavelength(s) | 1.54 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 38.225, 58.766, 125.442 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.236 - 2.950 |
R-factor | 0.20497 |
Rwork | 0.202 |
R-free | 0.27110 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.014 |
RMSD bond angle | 1.506 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | REFMAC (5.5.0109) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 62.750 | 3.110 |
High resolution limit [Å] | 2.950 | 2.950 |
Rmerge | 0.116 | 0.324 |
Number of reflections | 6282 | |
<I/σ(I)> | 9.5 | 2.3 |
Completeness [%] | 98.9 | 97.5 |
Redundancy | 2.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | The purified protein which contained 100 uM m7-GTP was then concentrated to about 7 mg/mL in 20 mM Hepes, pH7.6, 100 mM KCl, 1mM DTT, 0.1 mM EDTA for crystallization. The m7-GTP-bound eIF4e protein was crystallized with 1:1 ratio of protein solution to reservoir solution of 17-20% PEG-3350 and 0.1-0.4M Na formate, VAPOR DIFFUSION, SITTING DROP, temperature 289K |