3ZLI
Crystal structure of JmjC domain of human histone demethylase UTY
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2012-12-15 |
Detector | DECTRIS PILATUS 6M |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 90.585, 110.249, 118.242 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.010 - 1.800 |
R-factor | 0.17741 |
Rwork | 0.176 |
R-free | 0.20435 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3avs |
RMSD bond length | 0.014 |
RMSD bond angle | 1.533 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.7.0032) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.960 | 1.830 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.072 | 0.900 |
Number of reflections | 110147 | |
<I/σ(I)> | 13.4 | 2 |
Completeness [%] | 100.0 | 100 |
Redundancy | 6.7 | 6.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 0.2M TRIMETHYLAMINE N-OXIDE; 0.1M HEPES PH 7.5; 10%(W/V) PEG 3350 |