3WV2
Crystal structure of the catalytic domain of MMP-13 complexed with N-(3-methoxybenzyl)-4-oxo-3,4-dihydroquinazoline-2-carboxamide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32B2 |
Synchrotron site | SPring-8 |
Beamline | BL32B2 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2003-02-06 |
Detector | RIGAKU RAXIS V |
Wavelength(s) | 1.0 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 143.530, 35.719, 94.762 |
Unit cell angles | 90.00, 135.29, 90.00 |
Refinement procedure
Resolution | 19.910 - 2.300 |
R-factor | 0.17435 |
Rwork | 0.171 |
R-free | 0.24058 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.223 |
Data reduction software | d*TREK (7.1SSI) |
Data scaling software | CrystalClear |
Phasing software | MOLREP |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.910 | 19.900 | 2.380 |
High resolution limit [Å] | 2.300 | 4.930 | 2.300 |
Rmerge | 0.077 | 0.042 | 0.201 |
Total number of observations | 6053 | 5991 | |
Number of reflections | 14744 | ||
<I/σ(I)> | 9 | 16.9 | 3.6 |
Completeness [%] | 95.4 | 87.5 | 97.2 |
Redundancy | 4.03 | 4 | 3.98 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | 5uM Zn(OAc)2, 5mM CaCl2, 50mM NaCl, 20mM Tris HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |