3WEX
Crystal structure of HLA-DP5 in complex with Cry j 1-derived peptide (residues 214-222)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-09-09 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 |
Unit cell lengths | 61.150, 64.370, 130.360 |
Unit cell angles | 92.99, 97.53, 109.41 |
Refinement procedure
Resolution | 64.279 - 2.400 |
R-factor | 0.2034 |
Rwork | 0.202 |
R-free | 0.23680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3lqz |
RMSD bond length | 0.005 |
RMSD bond angle | 1.071 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.8.1_1168)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 64.280 | 64.300 | 2.570 |
High resolution limit [Å] | 2.400 | 6.260 | 2.400 |
Number of reflections | 70445 | ||
<I/σ(I)> | 12.31 | 24.37 | 2.7 |
Completeness [%] | 97.4 | 99.2 | 95.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 24% (w/v) PEG 3350, 0.2M Ammonium nitrate, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K |