3VNT
Crystal Structure of the Kinase domain of Human VEGFR2 with a [1,3]thiazolo[5,4-b]pyridine derivative
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-11-16 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.992 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 135.615, 56.618, 51.819 |
Unit cell angles | 90.00, 94.88, 90.00 |
Refinement procedure
Resolution | 37.330 - 1.640 |
R-factor | 0.15346 |
Rwork | 0.151 |
R-free | 0.19203 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.172 |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | REFMAC (refmac_5.2.0019) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.670 |
High resolution limit [Å] | 1.640 | 4.450 | 1.640 |
Rmerge | 0.052 | 0.032 | 0.786 |
Number of reflections | 46806 | ||
<I/σ(I)> | 15.4 | ||
Completeness [%] | 97.2 | 97.8 | 95.6 |
Redundancy | 4.1 | 3.9 | 3.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 100mM HEPES, 880-1440mM tri-sodium citrate, pH 7.0-8.0, vapor diffusion, sitting drop, temperature 293K |