Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3V6J

Replication of N2,3-Ethenoguanine by DNA Polymerases

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-D
Synchrotron siteAPS
Beamline21-ID-D
Temperature [K]110
Detector technologyCCD
Collection date2011-08-07
DetectorRAYONIX MX-300
Spacegroup nameP 1 21 1
Unit cell lengths52.700, 111.419, 98.807
Unit cell angles90.00, 102.57, 90.00
Refinement procedure
Resolution29.840 - 2.300
R-factor0.213
Rwork0.210
R-free0.27300
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3v6h
RMSD bond length0.016
RMSD bond angle2.142
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareREFMAC (5.6.0117)
Refinement softwareREFMAC (5.6.0117)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.380
High resolution limit [Å]2.2972.297
Rmerge0.0870.534
Number of reflections48579
<I/σ(I)>15.32.32
Completeness [%]97.885.7
Redundancy4.64
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
17.4293200 uM Dpo4, 240 uM primer-template DNA complex, 5 mM MgCl2, 1 mM dCTP, 20 mM Tris-HCl (pH 7.4), 60 mM NaCl, 2% glycerol (v/v), and 5 mM -mercaptoethanol. Precipitant: 0.1M Tris-HCl (pH 7.4), 15% polyethylene glycol 3350 (w/v), 0.1 M Ca(CH3COO)2, and 2% glycerol (v/v), temperature 293K

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon