3V6J
Replication of N2,3-Ethenoguanine by DNA Polymerases
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 110 |
Detector technology | CCD |
Collection date | 2011-08-07 |
Detector | RAYONIX MX-300 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 52.700, 111.419, 98.807 |
Unit cell angles | 90.00, 102.57, 90.00 |
Refinement procedure
Resolution | 29.840 - 2.300 |
R-factor | 0.213 |
Rwork | 0.210 |
R-free | 0.27300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3v6h |
RMSD bond length | 0.016 |
RMSD bond angle | 2.142 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | REFMAC (5.6.0117) |
Refinement software | REFMAC (5.6.0117) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.380 |
High resolution limit [Å] | 2.297 | 2.297 |
Rmerge | 0.087 | 0.534 |
Number of reflections | 48579 | |
<I/σ(I)> | 15.3 | 2.32 |
Completeness [%] | 97.8 | 85.7 |
Redundancy | 4.6 | 4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 7.4 | 293 | 200 uM Dpo4, 240 uM primer-template DNA complex, 5 mM MgCl2, 1 mM dCTP, 20 mM Tris-HCl (pH 7.4), 60 mM NaCl, 2% glycerol (v/v), and 5 mM -mercaptoethanol. Precipitant: 0.1M Tris-HCl (pH 7.4), 15% polyethylene glycol 3350 (w/v), 0.1 M Ca(CH3COO)2, and 2% glycerol (v/v), temperature 293K |