3Q4W
The structure of archaeal inorganic pyrophosphatase in complex with substrate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-12-10 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.07 |
Spacegroup name | H 3 2 |
Unit cell lengths | 100.046, 100.046, 98.711 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 28.881 - 1.441 |
R-factor | 0.1108 |
Rwork | 0.109 |
R-free | 0.13920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ude |
RMSD bond length | 0.026 |
RMSD bond angle | 1.253 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | PHENIX (1.6.4_486) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.460 |
High resolution limit [Å] | 1.440 | 3.910 | 1.440 |
Rmerge | 0.047 | 0.025 | 0.360 |
Number of reflections | 32854 | ||
<I/σ(I)> | 15.2 | ||
Completeness [%] | 94.3 | 87.3 | 82.8 |
Redundancy | 3.5 | 4 | 2.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 298 | Isopropanol, Calcium Chloride, Sodium Pyrophosphate, Sodium acetate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K |