3PMA
2.2 Angstrom crystal structure of the complex between Bovine Thrombin and Sucrose Octasulfate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 104 |
Detector technology | IMAGE PLATE |
Collection date | 2004-06-07 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 87.562, 87.562, 191.990 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 27.800 - 2.200 |
R-factor | 0.20574 |
Rwork | 0.204 |
R-free | 0.24456 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1mkx |
RMSD bond length | 0.008 |
RMSD bond angle | 1.244 |
Data reduction software | d*TREK |
Data scaling software | d*TREK |
Phasing software | PHASER |
Refinement software | REFMAC (5.5.0088) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 27.920 | 2.280 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.083 | 0.311 |
Number of reflections | 38745 | |
<I/σ(I)> | 13.4 | 6.3 |
Completeness [%] | 99.8 | 100 |
Redundancy | 7.87 | 9.03 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.2 | 295 | 3 microliters Bovine thrombin, 7 mg/ml in 0.01M Tris-HCl, ph 8.0, 0.05M NaCl, 0.1M sodium citrate, 20% w/v, VAPOR DIFFUSION, HANGING DROP, temperature 295K |