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3OVZ

Cathepsin K in complex with a covalent inhibitor with a ketoamide warhead

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2008-02-12
DetectorRIGAKU RAXIS IV
Wavelength(s)1.5418
Spacegroup nameP 43 21 2
Unit cell lengths55.741, 55.741, 128.916
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution51.160 - 2.020
R-factor0.247
Rwork0.244
R-free0.30800
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)In-house cathepsin K structure
RMSD bond length0.016
RMSD bond angle1.785
Data reduction softwared*TREK
Data scaling softwared*TREK
Phasing softwareMOLREP
Refinement softwareREFMAC (5.2.0019)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]55.7402.090
High resolution limit [Å]2.0202.020
Rmerge0.700
Number of reflections14051
<I/σ(I)>2
Completeness [%]100.0100
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
12980 mM NaAcetate pH=4.0, 0.3 M NaCl, 20% PEG4000, 0.2 M (NH4)2SO4, pH=2.9, 4% Methanol, Cryoprotectant composition:20% PEG4000, 0.1M (NH4)2SO4 pH=2.9, 4% Methanol, 20% PEG 400, pH 5, cocrystallization, hanging drop, temperature 398K

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