3OVJ
Structure of an amyloid forming peptide KLVFFA from amyloid beta in complex with orange G
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-11-16 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9792 |
Spacegroup name | P 1 |
Unit cell lengths | 9.536, 26.008, 25.803 |
Unit cell angles | 62.28, 88.59, 88.45 |
Refinement procedure
Resolution | 23.020 - 1.800 |
R-factor | 0.2067 |
Rwork | 0.205 |
R-free | 0.21950 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.690 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.1.4) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 90.000 | 90.000 | 1.940 |
High resolution limit [Å] | 1.800 | 3.080 | 1.800 |
Rmerge | 0.189 | 0.163 | 0.414 |
Number of reflections | 1870 | ||
<I/σ(I)> | 8.2 | ||
Completeness [%] | 91.5 | 98 | 71.7 |
Redundancy | 3.8 | 5.4 | 1.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | reservoir contained 30% w/v Polyethylene glycol 1,500, 20% v/v Glycerol, vapor diffusion, hanging drop, temperature 291K | |
2 | VAPOR DIFFUSION, HANGING DROP | 291 | reservoir contained 10% w/v Polyethylene glycol 1,500, 30% v/v Glycerol, vapor diffusion, hanging drop, temperature 291K |