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3OA6

Human MSL3 Chromodomain bound to DNA and H4K20me1 peptide

Replaces:  3M9P
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Wavelength(s)0.99999
Spacegroup nameP 1
Unit cell lengths37.976, 44.094, 67.500
Unit cell angles81.35, 89.84, 90.04
Refinement procedure
Resolution9.930 - 2.350
R-factor0.229
Rwork0.227
R-free0.27730
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.016
RMSD bond angle1.940
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwareREFMAC (5.4.0069)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]40.00040.0002.440
High resolution limit [Å]2.3505.0802.350
Rmerge0.0490.0280.420
Number of reflections17458
Completeness [%]97.294.497.6
Redundancy222
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP72770.04M Barium acetate, 0.05M sodium cacodylate, 18% 2-methyl-2,4-pentanediol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111Barium acetate
211sodium cacodylate
3112-methyl-2,4-pentanediol
412Barium acetate
512sodium cacodylate
6122-methyl-2,4-pentanediol

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PDB entries from 2024-07-24

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