3O56
Catalytic domain of human phosphodiesterase 4b2b in complex with a 5-heterocycle pyrazolopyridine inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-4 |
Synchrotron site | ESRF |
Beamline | ID14-4 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2004-02-05 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 0.9393 |
Spacegroup name | I 21 21 21 |
Unit cell lengths | 88.531, 94.592, 105.089 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 - 2.420 |
R-factor | 0.1993 |
Rwork | 0.196 |
R-free | 0.26010 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 3d3p |
RMSD bond length | 0.014 |
RMSD bond angle | 1.325 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.1.20) |
Phasing software | REFMAC |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.703 | 29.703 | 2.480 |
High resolution limit [Å] | 2.420 | 10.820 | 2.420 |
Rmerge | 0.094 | 0.089 | 0.379 |
Total number of observations | 795 | 9170 | |
Number of reflections | 17117 | ||
<I/σ(I)> | 16.5 | 6.6 | 2 |
Completeness [%] | 99.6 | 79.6 | 100 |
Redundancy | 7.2 | 4.6 | 7.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 277 | 14-18% PEG 3000, 10% Glycerol, 50mM Sodium Cacodylate pH 6.5, 100mM Sodium Acetate, 1M Sodium Chloride, 1% DMF, 5mM DTT, VAPOR DIFFUSION, SITTING DROP, temperature 277K |