3LQ0
Zymogen structure of crayfish astacin metallopeptidase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-10-06 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 0.873 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 55.910, 63.370, 69.190 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.920 - 1.450 |
R-factor | 0.15218 |
Rwork | 0.152 |
R-free | 0.18046 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ast |
RMSD bond length | 0.016 |
RMSD bond angle | 1.532 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.5.0046) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.730 | 1.540 |
High resolution limit [Å] | 1.450 | 1.450 |
Rmerge | 0.044 | 0.474 |
Number of reflections | 44227 | |
<I/σ(I)> | 27.3 | 3.8 |
Completeness [%] | 99.8 | 98.9 |
Redundancy | 7.1 | 6.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 277 | For crystallization, reservoir solutions were prepared by a Tecan robot and 200-nL crystallization drops were dispensed on 96x2-well MRC plates (Innovadyne) by a Cartesian (Genomic Solutions) nanodrop robot at the High-Throughput Crystallography Platform of the Barcelona Science Park. Best crystals appeared in a Bruker steady-temperature crystal farm at 4C with protein solution (10 mg/mL in 50mM AMPSO pH9.0) and 20% PEG 8000, 0.1M (NH4)2SO4, 0.01M MgCl2, 0.05M MES pH5.6 as reservoir solution. These conditions were efficiently scaled up to the microliter range with 24-well Cryschem crystallization dishes (Hampton Research). Crystals were cryo-protected with 16% PEG 8000, 20% glycerol, 0.1M (NH4)2SO4, 0.01M MgCl2, 0.05M MES pH5.6. , VAPOR DIFFUSION, SITTING DROP, temperature 277K |