3KYD
Human SUMO E1~SUMO1-AMP tetrahedral intermediate mimic
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-10-27 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9790 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 101.717, 115.608, 90.837 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 25.000 - 2.610 |
R-factor | 0.23 |
Rwork | 0.227 |
R-free | 0.28400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1y8q |
RMSD bond length | 0.006 |
RMSD bond angle | 0.897 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.5.0093) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 2.670 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.074 | 0.367 |
Number of reflections | 33019 | |
<I/σ(I)> | 15.8 | 2.7 |
Completeness [%] | 99.0 | 96.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 279 | 22% PEG 2000 MME, 0.2 M di-ammonium tartrate, 3% EtGly, VAPOR DIFFUSION, HANGING DROP, temperature 279K | |
1 | VAPOR DIFFUSION, HANGING DROP | 279 | 22% PEG 2000 MME, 0.2 M di-ammonium tartrate, 3% EtGly, VAPOR DIFFUSION, HANGING DROP, temperature 279K | |
1 | VAPOR DIFFUSION, HANGING DROP | 279 | 22% PEG 2000 MME, 0.2 M di-ammonium tartrate, 3% EtGly, VAPOR DIFFUSION, HANGING DROP, temperature 279K |