Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3KYD

Human SUMO E1~SUMO1-AMP tetrahedral intermediate mimic

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyCCD
Collection date2008-10-27
DetectorADSC QUANTUM 315
Wavelength(s)0.9790
Spacegroup nameP 21 21 2
Unit cell lengths101.717, 115.608, 90.837
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution25.000 - 2.610
R-factor0.23
Rwork0.227
R-free0.28400
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1y8q
RMSD bond length0.006
RMSD bond angle0.897
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwareREFMAC (5.5.0093)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.0002.670
High resolution limit [Å]2.6002.600
Rmerge0.0740.367
Number of reflections33019
<I/σ(I)>15.82.7
Completeness [%]99.096.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP27922% PEG 2000 MME, 0.2 M di-ammonium tartrate, 3% EtGly, VAPOR DIFFUSION, HANGING DROP, temperature 279K
1VAPOR DIFFUSION, HANGING DROP27922% PEG 2000 MME, 0.2 M di-ammonium tartrate, 3% EtGly, VAPOR DIFFUSION, HANGING DROP, temperature 279K
1VAPOR DIFFUSION, HANGING DROP27922% PEG 2000 MME, 0.2 M di-ammonium tartrate, 3% EtGly, VAPOR DIFFUSION, HANGING DROP, temperature 279K

219515

PDB entries from 2024-05-08

PDB statisticsPDBj update infoContact PDBjnumon