3KT3
Crystal structure of S. cerevisiae tryptophanyl-tRNA synthetase in complex with TrpAMP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NW12A |
Synchrotron site | Photon Factory |
Beamline | AR-NW12A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-11-23 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 1.0000 |
Spacegroup name | P 61 |
Unit cell lengths | 251.759, 251.759, 111.102 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.940 - 2.600 |
R-factor | 0.21535 |
Rwork | 0.214 |
R-free | 0.23672 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3kt0 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.004 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.690 |
High resolution limit [Å] | 2.600 | 5.600 | 2.600 |
Rmerge | 0.056 | 0.032 | 0.344 |
Number of reflections | 118348 | ||
<I/σ(I)> | 22.5 | ||
Completeness [%] | 96.3 | 99.8 | 83.4 |
Redundancy | 4.5 | 6.2 | 2.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.9 | 277 | 0.1M HEPES, 2.2M (NH4)2SO4, pH 5.9, VAPOR DIFFUSION, HANGING DROP, temperature 277K |