3KMD
Crystal structure of the p53 core domain bound to a full consensus site as a self-assembled tetramer
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.1 |
Synchrotron site | ALS |
Beamline | 8.2.1 |
Collection date | 2009-02-07 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 65.084, 93.713, 145.570 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.516 - 2.150 |
R-factor | 0.2173 |
Rwork | 0.216 |
R-free | 0.23950 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ac0 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.034 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.180 |
High resolution limit [Å] | 2.100 | 4.520 | 2.100 |
Rmerge | 0.138 | 0.085 | 0.614 |
Number of reflections | 52544 | ||
<I/σ(I)> | 6.8 | ||
Completeness [%] | 99.9 | 100 | 98.7 |
Redundancy | 7 | 6.9 | 5.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | hanging drop | 6.68 | 291 | 16% PEG 4000, 142mM Nacl, pH 6.68, hanging drop, temperature 291K |