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3KJF

Caspase 3 Bound to a covalent inhibitor

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 17-ID
Synchrotron siteAPS
Beamline17-ID
Temperature [K]100
Detector technologyCCD
DetectorADSC QUANTUM 210
Wavelength(s)1.0
Spacegroup nameP 21 21 2
Unit cell lengths96.690, 68.160, 44.770
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution18.710 - 2.000
R-factor0.18322
Rwork0.181
R-free0.20649
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.009
RMSD bond angle1.347
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareAMoRE
Refinement softwareREFMAC (5.5.0102)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0002.050
High resolution limit [Å]2.0002.000
Number of reflections16700
Completeness [%]89.260.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION7.8277Inhibitor (2 microliters of a 100 mM DMSO stock) added to 100 microliters of protein (6.5 mg/mL) in 20 mM Tris, 10 mM DTT pH 8.0. Drops contained equal volumes of protein and well solution (16% ethanol, 0.1 M Tris pH 7.8), VAPOR DIFFUSION, temperature 277K

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PDB entries from 2024-07-17

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