3HM3
The Structure and conformation of Lys-63 linked tetra-ubiquitin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 14-BM-C |
Synchrotron site | APS |
Beamline | 14-BM-C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-02-14 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.90020 |
Spacegroup name | P 21 3 |
Unit cell lengths | 105.882, 105.882, 105.882 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 25.680 - 1.960 |
R-factor | 0.1882 |
Rwork | 0.186 |
R-free | 0.23611 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ubq |
RMSD bond length | 0.023 |
RMSD bond angle | 1.885 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.680 | 50.000 | 2.010 |
High resolution limit [Å] | 1.960 | 4.830 | 1.960 |
Rmerge | 0.081 | 0.046 | 0.902 |
Number of reflections | 28616 | ||
<I/σ(I)> | 54.367 | ||
Completeness [%] | 99.6 | 94.3 | 100 |
Redundancy | 42.9 | 38.6 | 43.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 293 | 0.1M Sodium acetate, 5% PEG 3000, 50 mM Zinc acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K |