3GPU
MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC4-loop deletion complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X25 |
Synchrotron site | NSLS |
Beamline | X25 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2005-08-13 |
Detector | ADSC |
Wavelength(s) | 1.1 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 45.218, 93.294, 104.972 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.740 - 1.620 |
R-factor | 0.189 |
Rwork | 0.188 |
R-free | 0.20400 |
Starting model (for MR) | 2f5o protein part only |
RMSD bond length | 0.010 |
RMSD bond angle | 1.333 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | CNS |
Refinement software | REFMAC (5.4.0066) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.680 |
High resolution limit [Å] | 1.620 | 3.490 | 1.620 |
Rmerge | 0.056 | 0.034 | 0.495 |
Number of reflections | 56204 | ||
<I/σ(I)> | 25.882 | ||
Completeness [%] | 97.9 | 91 | 99.4 |
Redundancy | 5.3 | 5.4 | 5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 298 | PEG 8K, sodium cacodylate, glycerol, pH 7.0, vapor diffusion, hanging drop, temperature 298K |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | PEG 8K | ||
2 | 1 | 1 | sodium cacodylate | ||
3 | 1 | 1 | glycerol | ||
4 | 1 | 2 | PEG 8K | ||
5 | 1 | 2 | sodium cacodylate | ||
6 | 1 | 2 | glycerol |