3GF9
Crystal structure of human Intersectin 2 RhoGEF domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-02-15 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97937 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 106.249, 29.616, 86.150 |
Unit cell angles | 90.00, 121.06, 90.00 |
Refinement procedure
Resolution | 36.899 - 2.500 |
R-factor | 0.224 |
Rwork | 0.221 |
R-free | 0.27700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ki1 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.137 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.590 |
High resolution limit [Å] | 2.500 | 5.380 | 2.500 |
Rmerge | 0.091 | 0.035 | 0.621 |
Number of reflections | 8098 | ||
<I/σ(I)> | 10.2 | ||
Completeness [%] | 97.3 | 99.7 | 87.7 |
Redundancy | 3.1 | 3.2 | 2.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 291 | 25% PEG-3350, 0.1M ammonium sulfate, 0.1M Bis-Tris, 1:100 papain protease was added, SDS-PAGE indicated that the crystallized protein had a molecular weight of 23kDa, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K |