3F2R
Crystal structure of human choline kinase alpha in complex with hemicholinium-3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E |
Detector technology | IMAGE PLATE |
Collection date | 2008-01-16 |
Detector | RIGAKU RAXIS |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 55.553, 119.581, 131.301 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.801 - 2.350 |
R-factor | 0.222 |
Rwork | 0.221 |
R-free | 0.27500 |
Structure solution method | MR |
Starting model (for MR) | 2i7q |
RMSD bond length | 0.017 |
RMSD bond angle | 1.399 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.5.0044) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.430 |
High resolution limit [Å] | 2.350 | 5.060 | 2.350 |
Rmerge | 0.113 | 0.038 | 0.971 |
Number of reflections | 37556 | ||
<I/σ(I)> | 9.9 | ||
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 6.6 | 6.8 | 6.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 291 | 0.01M TRIS pH 8.0, 0.5M sodium chloride, 0.005M magnesium chloride, 0.01M DTT, 0.003M hemicholinium-3., pH 7.5, vapor diffusion, temperature 291K |