3DDO
X-RAY Structure of the Uridine Phosphorylase from Salmonella Typhimurium in Complex with by Phosphate Ion at 1.5A Resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | EMBL/DESY, HAMBURG BEAMLINE X11 |
Synchrotron site | EMBL/DESY, HAMBURG |
Beamline | X11 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2004-12-08 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 1.0500 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 89.600, 124.920, 134.930 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.908 - 1.500 |
R-factor | 0.169 |
Rwork | 0.166 |
R-free | 0.21200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3c74 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.094 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine)) |
Data quality characteristics
Overall | |
Low resolution limit [Å] | 42.100 |
High resolution limit [Å] | 1.480 |
Rmerge | 0.212 |
Number of reflections | 246188 |
Completeness [%] | 98.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.2 | 298 | 20% PEG 4000, 0.1M potassium phosphate, 0.2M magnesium chloride, 0.1M cacodylate, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K |