Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3DC8

Crystal structure of dihydropyrimidinase from Sinorhizobium meliloti

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsBRUKER AXS MICROSTAR
Temperature [K]100
Detector technologyCCD
Collection date2006-08-31
DetectorBRUKER SMART 6000
Wavelength(s)1.5418
Spacegroup nameC 2 2 21
Unit cell lengths124.887, 126.281, 196.104
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.600 - 1.850
R-factor0.149
Rwork0.148
R-free0.17600
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1yny 1kcx 1k1d
RMSD bond length0.028
RMSD bond angle1.644
Data reduction softwareSAINT
Data scaling softwareSAINT
Phasing softwareMOLREP
Refinement softwareREFMAC (5.2.0019)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]39.8901.900
High resolution limit [Å]1.8501.850
Number of reflections129593
<I/σ(I)>133.11
Completeness [%]98.489.1
Redundancy3.471.83
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1COUNTER-DIFFUSION4.62934.0M sodium formate, 0.1M sodium acetate, pH 4.6, COUNTER-DIFFUSION, temperature 293K

237735

PDB entries from 2025-06-18

PDB statisticsPDBj update infoContact PDBjnumon