Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3D2O

Crystal Structure of Manganese-metallated GTP Cyclohydrolase Type IB

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL7-1
Synchrotron siteSSRL
BeamlineBL7-1
Temperature [K]100
Detector technologyCCD
Collection date2008-03-07
DetectorADSC QUANTUM 315
Wavelength(s)0.97607
Spacegroup nameC 2 2 21
Unit cell lengths92.225, 100.420, 113.947
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.330 - 2.040
R-factor0.189
Rwork0.185
R-free0.26400
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3D1T
RMSD bond length0.019
RMSD bond angle1.754
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareREFMAC (5.2.0019)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.110
High resolution limit [Å]2.0402.040
Rmerge0.0710.428
Number of reflections33675
<I/σ(I)>11
Completeness [%]99.899.9
Redundancy4.54.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8298(PEG 6000, 10-16%), LiCl (1-1.4 M), Tris (50 mM, pH 9.0) and Tris-Cl (50 mM, pH 7.0). Enzym sample prepared at 10 mg/mL in 50 mM Tris-HCl, 50 mM KCl, 1 mM DTT, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon