3BSO
Norwalk Virus polymerase bound to cytidine 5'-triphosphate and primer-template RNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2007-12-01 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.11587 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 75.100, 93.473, 96.538 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 60.000 - 1.740 |
R-factor | 0.20218 |
Rwork | 0.201 |
R-free | 0.23171 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.060 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 60.000 | 1.800 |
High resolution limit [Å] | 1.740 | 1.740 |
Rmerge | 0.045 | 0.436 |
Number of reflections | 69074 | |
<I/σ(I)> | 29.2 | 2 |
Completeness [%] | 98.1 | 90.5 |
Redundancy | 3.8 | 3.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 298 | 16% (w/v) PEG 8000, 25% (w/v) glycerol, 100 mM Tris-HCl, 50 mM KCl, 4 mM MgCl2, 10 mM MnCl2, 14 mM 2-mercaptoethanol, 0.1% (w/v) CHAPS, 0.5 mM RNA duplex, 1 mM CTP, 0.03 mM polymerase, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | PEG 8000 | ||
10 | 1 | 2 | PEG 8000 | ||
11 | 1 | 2 | glycerol | ||
12 | 1 | 2 | Tris-HCl | ||
13 | 1 | 2 | KCl | ||
14 | 1 | 2 | MgCl2 | ||
15 | 1 | 2 | MnCl2 | ||
16 | 1 | 2 | 2-mercaptoethanol | ||
17 | 1 | 2 | CHAPS | ||
18 | 1 | 2 | CTP | ||
2 | 1 | 1 | glycerol | ||
3 | 1 | 1 | Tris-HCl | ||
4 | 1 | 1 | KCl | ||
5 | 1 | 1 | MgCl2 | ||
6 | 1 | 1 | MnCl2 | ||
7 | 1 | 1 | 2-mercaptoethanol | ||
8 | 1 | 1 | CHAPS | ||
9 | 1 | 1 | CTP |