3BOM
Crystal structure of trout hemoglobin at 1.35 Angstrom resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2006-12-16 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97935 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 57.455, 63.162, 78.702 |
Unit cell angles | 90.00, 93.10, 90.00 |
Refinement procedure
Resolution | 39.294 - 1.350 |
R-factor | 0.172 |
Rwork | 0.170 |
R-free | 0.21200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ouu |
RMSD bond length | 0.009 |
RMSD bond angle | 1.197 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | REFMAC (5.2.0005) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 39.294 | 39.294 | 1.380 |
High resolution limit [Å] | 1.350 | 3.330 | 1.350 |
Rmerge | 0.118 | 0.088 | 0.459 |
Number of reflections | 120196 | ||
<I/σ(I)> | 10.482 | 2.306 | |
Completeness [%] | 97.4 | 99 | 77.8 |
Redundancy | 7 | 7.3 | 4.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.7 | 277 | Protein solution (15 mg/mL CO-bound trout IV Hemoglobin, 0.025 M Sodium chloride, 0.010 M Tris-HCl pH 8.0) was mixed one to one with carbon monoxide flushed well solution to yield a final concentration of 22.5% PEG 1500 and 0.04-0.06 M MES/Acetate at pH 5.7. The solutions were pH-ed to verify that the crystallization conditions were at pH 5.7 due to the lower buffer molarity. Crystals were cryo-protected with 22.5% PEG 1500, 22.5% Ethylene glycol, 0.04-0.06 M MES/Acetate at pH 5.7 in a single step, VAPOR DIFFUSION, HANGING DROP, temperature 277K |