3AE3
Crystal structure of porcine heart mitochondrial complex II bound with 2-Nitro-N-phenyl-benzamide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-11-15 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.00000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 71.514, 84.499, 295.567 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.440 - 3.350 |
R-factor | 0.216 |
Rwork | 0.214 |
R-free | 0.26100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1zoy |
RMSD bond length | 0.006 |
RMSD bond angle | 0.933 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.470 |
High resolution limit [Å] | 3.350 | 7.210 | 3.350 |
Rmerge | 0.096 | 0.036 | 0.518 |
Rmeas | 0.096 | ||
Total number of observations | 68000 | ||
Number of reflections | 22889 | ||
<I/σ(I)> | 10.4 | ||
Completeness [%] | 85.1 | 85.5 | 85.7 |
Redundancy | 3 | 3.5 | 2.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.2 | 293 | 25mM HEPES-NAOH, 7% PEG 4000, 200mM Sucrose, 100mM NaCl, 10mM CaCl2, 0.5mM EDTA, 3% 1,6-haxanediol, 0.5% n-decyl-beta-D-maltoside, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K |