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3ZVY

PHD finger of human UHRF1 in complex with unmodified histone H3 N- terminal tail

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSOLEIL BEAMLINE PROXIMA 1
Synchrotron siteSOLEIL
BeamlinePROXIMA 1
Temperature [K]110
Detector technologyCCD
DetectorADSC CCD
Spacegroup nameP 43 21 2
Unit cell lengths42.300, 42.300, 182.700
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution41.210 - 1.950
R-factor0.1836
Rwork0.181
R-free0.22700
Structure solution methodSAD
Starting model (for MR)NONE
RMSD bond length0.007
RMSD bond angle1.107
Data reduction softwareXDS
Data scaling softwareXSCALE
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]38.4002.000
High resolution limit [Å]1.9501.950
Rmerge0.0500.530
Number of reflections22160
<I/σ(I)>21.463.12
Completeness [%]95.883.9
Redundancy4.964.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION290CRYSTALS WERE OBTAINED AT 17 DEGREES USING THE VAPOR DIFFUSION METHOD BY MIXING A PROTEIN SOLUTION AT A CONCENTRATION OF 606 MICROM (IN 20 MM TRIS PH 7, 150 MM NACL, 0.5 MM TCEP, 25 MICROM ZNCL2 AND 0.1 MM PMSF) AND 10-FOLD EXCESS OF PEPTIDE WITH AN EQUAL VOLUME OF RESERVOIR SOLUTION (0.1 M TRIS PH 8.5, 0.2 M MGCL2, 30 % PEG 4000). CRYSTALS WERE CRYOPROTECTED WITH 15 % MPD AND FLASH FROZEN IN LIQUID NITROGEN.

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PDB entries from 2024-05-15

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