3WZD
KDR in complex with ligand lenvatinib
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Detector | PSI PILATUS 6M |
Wavelength(s) | 1.00003 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 42.334, 84.225, 46.892 |
Unit cell angles | 90.00, 100.20, 90.00 |
Refinement procedure
Resolution | 46.150 - 1.570 |
R-factor | 0.18372 |
Rwork | 0.181 |
R-free | 0.21188 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.580 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Refinement software | REFMAC (5.5.0109) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.150 | 1.820 |
High resolution limit [Å] | 1.570 | 1.570 |
Rmerge | 0.060 | 0.444 |
Number of reflections | 44907 | |
Completeness [%] | 99.5 | 99.7 |
Redundancy | 4.2 | 4.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 9.5 | 277 | 0.1M CHES,5-20% PEG 8000, pH 9.5, VAPOR DIFFUSION, temperature 277K |