3K5T
Crystal structure of human diamine oxidase in space group C2221
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2007-01-11 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.5418 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 94.771, 96.954, 178.060 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 89.090 - 2.110 |
R-factor | 0.239 |
Rwork | 0.236 |
R-free | 0.29000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2c10 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.224 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.2.25) |
Phasing software | PHASER |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 178.060 | 89.100 | 2.210 |
High resolution limit [Å] | 2.106 | 6.640 | 2.100 |
Rmerge | 0.111 | 0.104 | 0.299 |
Total number of observations | 31372 | 19558 | |
Number of reflections | 45200 | ||
<I/σ(I)> | 15.7 | 5.5 | 2.5 |
Completeness [%] | 95.2 | 100 | 96.2 |
Redundancy | 7.4 | 19 | 3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.1 | 298 | 0.1 M MES (pH 6.1), 12% w/v PEG 20,000, vapor diffusion, hanging drop, temperature 298K |
1 | VAPOR DIFFUSION, HANGING DROP | 6.1 | 298 | 0.1 M MES (pH 6.1), 12% w/v PEG 20,000, vapor diffusion, hanging drop, temperature 298K |