2YQ5
Crystal Structure of D-isomer specific 2-hydroxyacid dehydrogenase from Lactobacillus delbrueckii ssp. bulgaricus: NAD complexed form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Detector | ADSC CCD |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 92.718, 110.012, 147.736 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.990 - 2.750 |
R-factor | 0.19122 |
Rwork | 0.188 |
R-free | 0.25895 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1dxy |
RMSD bond length | 0.012 |
RMSD bond angle | 1.678 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.240 | 2.900 |
High resolution limit [Å] | 2.750 | 2.750 |
Rmerge | 0.100 | 0.560 |
Number of reflections | 39722 | |
<I/σ(I)> | 12.7 | 2.6 |
Completeness [%] | 99.5 | 99.9 |
Redundancy | 4.7 | 4.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 25% PEG 3350, 200MM MGCL2, 100MM HEPES PH7.5 |