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2YQ5

Crystal Structure of D-isomer specific 2-hydroxyacid dehydrogenase from Lactobacillus delbrueckii ssp. bulgaricus: NAD complexed form

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyCCD
DetectorADSC CCD
Spacegroup nameP 21 21 21
Unit cell lengths92.718, 110.012, 147.736
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.990 - 2.750
R-factor0.19122
Rwork0.188
R-free0.25895
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1dxy
RMSD bond length0.012
RMSD bond angle1.678
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwareREFMAC (5.7.0029)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]49.2402.900
High resolution limit [Å]2.7502.750
Rmerge0.1000.560
Number of reflections39722
<I/σ(I)>12.72.6
Completeness [%]99.599.9
Redundancy4.74.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
125% PEG 3350, 200MM MGCL2, 100MM HEPES PH7.5

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PDB entries from 2024-07-10

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