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2YIP

Crystal Structure of Parasite Sarcocystis muris Microneme Protein SML- 2 in complex with 1-Thio-beta-D-Galactose (SPACEGROUP P212121)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsEMBL/DESY, HAMBURG BEAMLINE BW7B
Synchrotron siteEMBL/DESY, HAMBURG
BeamlineBW7B
Temperature [K]110
Detector technologyIMAGE PLATE
Collection date2000-05-19
DetectorMAR scanner 345 mm plate
Spacegroup nameP 21 21 21
Unit cell lengths53.310, 130.000, 158.850
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution33.890 - 2.140
R-factor0.16086
Rwork0.159
R-free0.20242
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2yil
RMSD bond length0.024
RMSD bond angle1.905
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareREFMAC (5.5.0109)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]35.0002.200
High resolution limit [Å]2.1402.140
Rmerge0.0300.100
Number of reflections61346
<I/σ(I)>38.614.1
Completeness [%]99.595.8
Redundancy54.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.9291VAPOR DIFFUSION, HANGING DROP. PH 7.9, TEMPERATURE 291K. VAPOR DIFFUSION, HANGING DROP. PROTEIN SOLUTION: 50 MM TRIS-HCL, 150 MM NACL, PH 8.3, 12MG/ML SML-2. RESERVOIR: 0.1 M HEPES, PH 7.5, 0.1 M NACL, 1.7 M AMMONIUM SULFATE, 15% GLYCEROL. DROPLET: 1 MICROLITER PROTEIN SOLUTION: 1 MICROLITER RESERVOIR SOLUTION. PROTEIN:1-THIO-BETA-D-GALACTOSE MOLAR RATIO 1:100.

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PDB entries from 2024-07-10

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