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2YGP

WIF domain-EGF-like domain 1 Met77Trp of human Wnt inhibitory factor 1 in complex with 1,2-dipalmitoylphosphatidylcholine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
DetectorDECTRIS PILATUS 6M
Spacegroup nameC 2 2 2
Unit cell lengths50.760, 134.241, 60.193
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.316 - 2.222
R-factor0.1875
Rwork0.185
R-free0.22890
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.015
RMSD bond angle2.217
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]29.3202.280
High resolution limit [Å]2.2202.220
Rmerge0.0900.570
Number of reflections10433
<I/σ(I)>12.72.3
Completeness [%]99.492
Redundancy6.46
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
171.1 M DIAMMONIUM TARTRATE, PH 7.0, 20 MM SPERMIDINE, 0.5 MM CACL2

217705

PDB entries from 2024-03-27

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