2YBX
Crystal Structure of Human Phosphatidylinositol-5-phosphate 4-kinase type-2 alpha
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-07-08 |
Detector | ADSC CCD |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 44.040, 98.508, 104.879 |
Unit cell angles | 90.00, 93.43, 90.00 |
Refinement procedure
Resolution | 28.370 - 2.560 |
R-factor | 0.1907 |
Rwork | 0.188 |
R-free | 0.23830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1bo1 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.070 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | BUSTER (2.11.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 28.470 | 2.700 |
High resolution limit [Å] | 2.560 | 2.560 |
Rmerge | 0.090 | 0.680 |
Number of reflections | 28302 | |
<I/σ(I)> | 7.9 | 1.1 |
Completeness [%] | 98.1 | 96.8 |
Redundancy | 3.7 | 3.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 7.5 | 0.2 M MAGNESIUM FORMATE, 16% PEG3350, 2 MM BENZYL(1,3,5)TRIPHOSPHATE, pH 7.5 |