Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2YBX

Crystal Structure of Human Phosphatidylinositol-5-phosphate 4-kinase type-2 alpha

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyCCD
Collection date2010-07-08
DetectorADSC CCD
Spacegroup nameP 1 21 1
Unit cell lengths44.040, 98.508, 104.879
Unit cell angles90.00, 93.43, 90.00
Refinement procedure
Resolution28.370 - 2.560
R-factor0.1907
Rwork0.188
R-free0.23830
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1bo1
RMSD bond length0.010
RMSD bond angle1.070
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwareBUSTER (2.11.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]28.4702.700
High resolution limit [Å]2.5602.560
Rmerge0.0900.680
Number of reflections28302
<I/σ(I)>7.91.1
Completeness [%]98.196.8
Redundancy3.73.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
17.50.2 M MAGNESIUM FORMATE, 16% PEG3350, 2 MM BENZYL(1,3,5)TRIPHOSPHATE, pH 7.5

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon